A.N. Belozersky Institute

Bioinformatics Portal GeneBee

Russian EMBnet Node

Bioinformatics Portal of A.N.Belozersky Institute,
Moscow State University

Supported by the Russian Foundation for Basic Research, grant 13-07-00969-a
Original Services of GeneBee Group
Databanks screening Sequence analysis
 Screening by keywords  AliBee – Multiple alignment Release 3.0
 AliGraf – Graphical Alignment
 AliComp – Alignments Comparison
 Screening by similarity Release 3.0  TreeTop – phylogenetic reconstruction
 DotHelix – construction of local similarity map for two sequences
 RNA secondary structure prediction
 Pipeline Screening: Keyword → Similarity  OrfBee – ORF Predictor
 IGLA – Pairwise 3D-alignment
Gene Expression Analysis
 GEA – System for Gene Expression Analysis

GeneBee Group Collaboration Research
  RFBR Development of Bionformatics Portal for Suppporting Research in Molecular and System Biology
  FP6 VIZIER Comparative Structural Genomics of Viral Enzymes Involved in Replication
  INTAS Global and Local Protein Matching
  CRDF Quality Control, ORF detection and Gene Anotation of Peanibacilus dendriformisamd PeanibacillusVortec genomes
Services of the seminar "Sequences and Structures"
 NPIDB: Nucleic Acid - Protein Interaction Data Base  CluD: Hydrophobic clusters detector in 3D structures
 Conserved water molecules in 3D structures  Lcore: geometrical cores of structural families
 PQ: phylogenetic reconstruction  StructAlign: alignment of DNA-protein compelxes
Sheet maps constructor and protein architecture detector Nhunt: homology search of nucleic acids

Free Methods Installed On GeneBee
 NCBI BLAST 2.2.8 Search  NCBI MegaBlast Service
Basic FASTA 3.4 Homology Search
ClustalW 1.83         [Basic]    [Advanced] Muscle 3.6