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Screening pattern or alignment against protein databank
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Protein databanks
Input Type
  Pattern Alignment
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Pattern (or alignment)
Pattern example 1:
Pattern example 2:
G-P-H-V-T [RK]-x-A-x(3,5)-{YWL}-x(2)-W
Alignment example:

FA9_CAVPO    GPHVTEVEGTNFLTGIISWGEE-CAMKGKYGIYTKVSRYVNW-
FA9_PIG      GPHVTEVEGTSFLTGIISWGEE-CAVKGKYGIYTKVSRYVNW-
KAG_PIG      GPLICNGM----WQGITSWGhtpCGSANKPSIYTKLIFYLDWI

FA9_CAVPO    FCAGFHEGGRDSCQGDSG
FA9_PIG      FCAGFHEGGKDSCLGDSG
KAG_PIG      LCAGYLPGGKDTCMGDSG 

Last updated - August 14, 2000.
Any comments or suggestions are welcomed at: nik@genebee.msu.su