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Belozersky Institute

GeneBee

Russian EMBnet Node

RNA secondary structure prediction
Method
Energy threshold
Conserved factor
Compensated factor
Cluster factor
Conservativity
Greedy parameter
Part of sequence
to
Treated sequence
Input Type
Alignment Sequence
Include picture
Sequence name
Alignment OR sequence (without name). The usage of Alignment is strongly recommended.
Alignment example: Sequence example:
ANMF   CGCGGGGTAGAGCAGCCTGGTAGCTCGTCGGGCTCATA
AQTRNF GCC-AGGATAGCTCAGTTGGTAGAGCAGAGGACTGAAA
BGTRF  GCC-AGGATAGCTCAGTTGGTAGAGCAGAGGACTGAAT

ANMF   ATCCTCTCCCCGCC----
AQTRNF ATCCGCCTCCCGGCACCA
BGTRF  ATCCGCCTCCCGGCACCA
tggcacaagc gccgcaaaac cgggggcaag agaaagccct
accacaagaa gcggaagtat gagttggggc gcccagctgc
caacaccaag ttggcccccg ccgcatccac acagtccgtg
tgcggggagg taacaagaaa taccgtgccc tgaggttgga
tggaggagca gttccagcag ggcaagcttc ttggtgagaa
ggcgtgcatc gcttcaaggc cgggacagtg tggccgagca
gatggctatg tgctagaggg caaagagttg gagttctatc
ttaggaaaat caaggcccgc

Last updated - May 16, 2001.
Any comments or suggestions are welcomed at: nik@genebee.msu.su