| ProSite |
Functional protein sites |
| PRINTS |
Protein fingerprint database |
| BLOCKS |
Multiply aligned ungapped segments of proteins represented in the Prosite databank |
| SCOP, CATH |
Protein structural classifications |
| MMDB |
Molecular Modelling Database (NCBI, USA) |
| 3DEE |
Database of Domain Definitions |
| FSSP |
PDB subset:
families of Structurally Similar Proteins (EMBL) |
| Pfam |
Database of protein families and HMMs (collection of multiple sequence alignments and
hidden Markov models) |
| PRODOM |
Collection of protein families constructed by clustering all complete protein sequences in SwissProt. |
| PROTFAM
|
Protein families constructed by clustering of protein sequences in PIR. |
| TGDB |
Tumor Gene Database: oncogenes and relevant genes |
| OMIM |
Online Mendelian
Inheritance in Man: catalog of human genes and genetic disorders |
| GSDB |
The Genome Sequence Database: complete relational database of DNA sequences and annotation |
| GDB |
Genome Data Base |
| dbSNP |
Database of Single Nucleotide Polymorphisms |
| TIGR Database |
Genomes:
human, Arabidopsis thaliana, Haemophilus influenzae, Mycoplasma genitalium |
| Saccharomyces Genome Database |
|
| Candida albicans data |
|
| Malaria Database |
|
| FlyBase |
Drosophila database |
| The Mouse Genome Database |
|
| ARS Genome Database Resource (USA) |
Genomes of cereals (wheat, rice, etc.), trees (apple, pine), and models (caenorhabditis, arabidopsis, etc.) |
| Animal Genome Database (Japan) |
|
| Parasite Genome (EBI) |
Apicomplexa (incl. Plasmodium), Schistosoma, Tripanosoma, Leishmania, and Nematode DNA |
| ICTVdB |
A Universal Virus Database |
| HIV sequence Database (Los Alamos) |
|
| EcoCyc |
Encyclopedia of Escherichia coli genes and metabolism,
graphical user interface |
| NRSub |
Non-redundant database for Bacillus subtilis |
| YPD, WormPD |
Databases for proteins of Saccharomyces cerevisiae and Caenorhabditis elegans |
| TRRD |
Transcription Regulatory Regions Database (Eukaryotic genomes) |
| tRNA sequences |
|
| rRNA WWW server (Antwerpen) |
Databases of ribosomal RNA |
| MITOMAP |
Human mitochondrial genome database |
| Histone Sequence Database |
|
| KabatMan |
Database of antibody structure and sequence information |
| REBASE |
Database of restriction enzymes and methylases |
| LIGAND |
Ligand Chemical Database for Enzyme Reaction |
| MassBank |
Mass spectra of proteins |
| SWISS-2DPAGE |
Database of two-dimensional polyacrylamide gel electrophoresis |
| IMGT |
International ImMunoGeneTics database |