BAGG Options

Alignment in fasta format
Minimum Block Width
Maximum Block Width
Gap penalty
Coefficient M    


  • Please cite BAGG: "Antonov I.V., Leontovich AM, and Gorbalenya AE (2008) BAGG - Blocks Accepting Gaps Generator, version 1.0"
  • Ivan V. Antonov, "Splitting protein alignments in blocks containing gaps: theory, comparative evaluation and application", diploma work, Moscow State University, Russia, 2008 (in Russian) [pdf]