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Belozersky Institute

GeneBee

Russian EMBnet Node

Multiple Alignment

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Comments on output
Max. number of motifs (10 to 300)
Length threshold(4 to 50)
Power threshold(2 to 20)
Coincidence ratio(0 to 1)
Minimum letter frequence 
Windows width(3 to 7)
Maximum number of shifts(1 to 100)
Minimum homology ratio(0 to 1)
How to process motifs
Method
Gap penalty (in SD units)(1 to 5)
Register size

Matrix
Colors

Motif frequences recalc
 
Yes No
Result Alignment Format:

You can paste or edit your sequences right here (in FASTA format)
Example:
>SeqName1
MLPTAVLLVL AVSVAARDNA TCDGPCGLRF RQKLESGMRV
MYHNNRRYHT CGGILLNSHW VLTAAHCFKN KKKVT
>SeqName2
IVGGRRAQPQ EFPFLASIQK QGRPFCAGAL VHPRFVLTAA
RQQEQSRQTF SIRSISQNGY DPRQNLNDVL
>SeqName3
SRRTYTLTDY LKSTFR
Last updated - July 12, 1999.