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Belozersky Institute

GeneBee

Russian EMBnet Node

Screening by similarity

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Nucleotide databanks:
Divisions of EMBL:
Protein databanks: Complete Procaryotic
Genomes (EMBL)
Parameters
Motif's length
threshold

Motif's power threshold
Alignment's power
threshold

Coincidence ratio
Maximum number of shifts
Maximum number
of selected alignments

Start position
of query sequence

End position of query sequence
Gap penalty
Strand
Threshold of motif's homology
percentage

Threshold of alignment's
conservativity

Aminoacid colors
Aminoacid matrices
Accurate dothelix
Yes No
Code
Motif frequences recalc
Yes No
Receive bank sequences
Yes No
Data Type

Sequence Alignment
Your e-mail address
Receive 3D coordinate
Yes No
Query sequence name

Alignment example:
FA9_CAVPO  GPHVTEVEGTNFLTGIISWGEE-CAMKGKYGIYTKVSR
FA9_PIG    GPHVTEVEGTSFLTGIISWGEE-CAVKGKYGIYTKVSR
KAG_PIG    GPLICNGM----WQGITSWGhtpCGSANKPSIYTKLIF

FA9_CAVPO  FCAGFHEGGRDSCQGDSG
FA9_PIG    FCAGFHEGGKDSCLGDSG
KAG_PIG    LCAGYLPGGKDTCMGDSG