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Belozersky Institute

GeneBee

Russian EMBnet Node

RNA secondary structure prediction

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Method
Energy threshold
Conserved factor
Compensated factor
Cluster factor
Conservativity
Greedy parameter
Part of sequence
to
Treated sequence
Input Type
Alignment Sequence
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Sequence name
Alignment (sequence). The usage of Alignment is strongly recommended.
Alignment example:
ANMF     CGCGGGGTAGAGCAGCCTGGTAGCTCGTCGGGCTCATAA
AQTRNF   GCC-AGGATAGCTCAGTTGGTAGAGCAGAGGACTGAAAA
BGTRF    GCC-AGGATAGCTCAGTTGGTAGAGCAGAGGACTGAATA

ANMF     TCCTCTCCCCGCC----
AQTRNF   TCCGCCTCCCGGCACCA
BGTRF    TCCGCCTCCCGGCACCA