DotHelix: Motifs' Collection Map Results

Sample with new green

References:

2. Brodsky L.I., Ivanov V.V., Ya.L. Kalaydzidis,Leontovich A.M., Nikolaev V.K., Feranchuk S.I.,Drachev V.A., GeneBee-NET:Internet-based server for analyzing biopolymers structure, 1995, Biochemistry, 60,8,923-928.

Name	Value
Title	Sample with new green
Motif's power threshold - DotHelix	0
Motif's power threshold - noise upper bound	4
Motif's length threshold	7
Maximum number of motifs to plot	1000
Maximum number of motifs to output	50
Threshold of motif's homology percentage_	0.01
Accurate Dothelix	ON
Motif frequences recalc	ON
Normalize weight matrix	ON
Weight matrices	DAYHOFF

Sequences

>NRAS_1


MTEYKLVVVG AGGVGKSALT IQLIQNHFVD EYDPTIEDSY RKQVVIDGET CLLDILDTAG
QEEYSAMRDQ VFAINNSKSF ADINLYREQI KRVKDSDDVP MVLVGNKCDL
PTRTVDTKQA HELAKSYGIP GVEDAFYTLV REIRQYRMKK LNSSDDGTQG
CMGLPCVVM

>NRAS_2


MTEYKLVVVG AGGVGKSALT EYDPTIEDSY RKQVVIDGET CLLDILDTAG
QEEYSAMRDQ YMRTGEGFLC VFAINNSKSF ADINLYREQI KRVKDSDDVP MVLVGNKCDL
HELAKSYGIP FIETSAKTRQ GVEDAFYTLV REIRQYRMKK LNSSDDGTQG
CMGLPCVVM

DAYHOFF AMINO ACIDS DISTANCE MATRIX A C D E F G H I K L M N P Q R S T V W Y A 12 C 8 22 D 10 5 14 E 10 5 13 14 F 6 6 4 5 19 G 11 7 11 10 5 15 H 9 7 11 11 8 8 16 I 9 8 8 8 11 7 8 15 K 9 5 10 10 5 8 10 8 15 L 8 4 6 7 12 6 8 12 7 16 M 9 5 7 8 10 7 8 12 10 14 16 N 10 6 12 11 6 10 12 8 11 7 8 12 P 11 7 9 9 5 9 10 8 9 7 8 9 16 Q 10 5 12 12 5 9 13 8 11 8 9 11 10 14 R 8 6 9 9 6 7 12 8 13 7 10 10 10 11 16 S 11 10 10 10 7 11 9 9 10 7 8 11 11 9 10 12 T 11 8 10 10 7 10 9 10 10 8 9 10 10 9 9 11 13 V 10 8 8 8 9 9 8 14 8 12 12 8 9 8 8 9 10 14 W 4 2 3 3 10 3 7 5 7 8 6 6 4 5 12 8 5 4 27 Y 7 10 6 6 17 5 10 9 6 9 8 8 5 6 6 7 7 8 10 20

DAYHOFF: Graphic of the Pairwise Motifs' Collection of DotHelix

  
Motif   1-1,    Power   15.5  Homology percent  79.8  Length     99
                      VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL.. . .   .   ... . .
>NRAS_1      (  71)   VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP
>NRAS_2      (  71)   VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLHELAKSYGIPFIETSAKTRQ

                      GVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
>NRAS_1      ( 131)   GVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
>NRAS_2      ( 131)   GVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM


  
Motif   1-2,    Power   11.6  Homology percent 100.0  Length     40
                      EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ
>NRAS_1      (  31)   EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ
>NRAS_2      (  21)   EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ


  
Motif   1-3,    Power    7.4  Homology percent 100.0  Length     20
                      MTEYKLVVVGAGGVGKSALT
>NRAS_1      (   1)   MTEYKLVVVGAGGVGKSALT
>NRAS_2      (   1)   MTEYKLVVVGAGGVGKSALT


  
Motif   1-4,    Power    6.2  Homology percent 100.0  Length     10
                      HELAKSYGIP
>NRAS_1      ( 121)   HELAKSYGIP
>NRAS_2      ( 111)   HELAKSYGIP